PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01889g14044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family RAV
Protein Properties Length: 202aa    MW: 23636.2 Da    PI: 10.1324
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01889g14044.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323.1e-102977155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              s++kGV    ++g W A+I+       + k ++lg+f +++eAa a++++ k+++ 
  Peinf101Scf01889g14044.1 29 SKFKGVV-GQRNGNWGARIYA------NhKMVWLGTFKSEKEAAMAYDKFLKEKYE 77
                              79****6.6779******999......44**********99***********9875 PP

2B375.94.6e-2492185184
                               EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                               f+k+l++sdv  + +rl +pkkfa ++         + ++ +++++++ d+s rsW+++++y+++ +++vlt+GW++F +++gL+
  Peinf101Scf01889g14044.1  92 FQKELSQSDVEIKlNRLLIPKKFALKYfpqicnnngEFQESKDVEMIFFDSSKRSWKFRYCYWRSNKSFVLTTGWNKFIEDKGLE 176
                               89*******97555********************997778899****************************************** PP

                               TT-EEEEEE CS
                        B3  76 egDfvvFkl 84 
                               ++D vvF+ 
  Peinf101Scf01889g14044.1 177 AKDRVVFSS 185
                               *******93 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-102975IPR016177DNA-binding domain
PfamPF008474.5E-52977IPR001471AP2/ERF domain
CDDcd000187.73E-142969No hitNo description
Gene3DG3DSA:3.30.730.102.1E-103070IPR001471AP2/ERF domain
PROSITE profilePS5103211.8383069IPR001471AP2/ERF domain
SMARTSM003803.1E-63078IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-2988187IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2491189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-1991183No hitNo description
SMARTSM010191.8E-1192199IPR003340B3 DNA binding domain
PfamPF023621.0E-2092184IPR003340B3 DNA binding domain
PROSITE profilePS5086311.53393201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MISSTTSSNH KSKKRSTNER KACSNMSGSK FKGVVGQRNG NWGARIYANH KMVWLGTFKS  60
EKEAAMAYDK FLKEKYEEGY PLKTLQCHKQ LFQKELSQSD VEIKLNRLLI PKKFALKYFP  120
QICNNNGEFQ ESKDVEMIFF DSSKRSWKFR YCYWRSNKSF VLTTGWNKFI EDKGLEAKDR  180
VVFSSSEYKI GPTKICMVFE ID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-209118613103DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257867.16e-70PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-30RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX12e-68A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE02e-68A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.14e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-32RAV family protein