PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01889g02039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 144aa    MW: 16581.5 Da    PI: 6.8919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01889g02039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323.1e-10661001855
                       AP2  18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               eIrdp+    + +r++lg+f +ae Aa a+++a+++++g
  Peinf101Scf01889g02039.1  66 EIRDPK----KaARVWLGTFESAEAAAIAYDEAALRFKG 100
                               89**84....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.71251108IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1352109IPR016177DNA-binding domain
SMARTSM003803.6E-1660114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2065109IPR001471AP2/ERF domain
PfamPF008475.5E-571100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGIKRAFSYN ELEEKEHHNI IHQEQHIIFP HMYSSARSQH EMSTFVSVLS QVIGNTDAKT  60
NNITTEIRDP KKAARVWLGT FESAEAAAIA YDEAALRFKG NKAKLNFPER VQGKTEFGYL  120
TICQEEFLSR SNNFQPFSQE HYPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-15611111263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248156.14e-42PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH547e-28EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1J6J6G29e-41A0A1J6J6G2_NICAT; Ethylene-responsive transcription factor erf114
STRINGXP_008356833.15e-35(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2516622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-20ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]