PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01851g00029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 340aa    MW: 38447.6 Da    PI: 7.7891
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01851g00029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.29.8e-411182643131
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec.... 73 
                                kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+kel +           s+ss sec    
  Peinf101Scf01851g00029.1 118 SKKDRHSKITTAQGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLNKSKSAVKELEEGtstaniggaiSASSTSECevis 202
                               79**********************************************************9996777777766555557776665 PP

                       TCP  74 ....eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                   e++++         +       +++++++ ++++ + a ++  +akesr++ararar rt +k  
  Peinf101Scf01851g00029.1 203 giidESATNDI-------QkeqpiinSKKEKKKAKSSRIRAAINHPVVAKESRKEARARARARTLKKSL 264
                               54322222222.......13334553333333344444444445888899*************998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-43118262IPR005333Transcription factor, TCP
PROSITE profilePS5136934.899119177IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.856245262IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MYPSNNYSPI SSSSNLYHMP SPSSIQYEHE LFQYFHDHHL LQPQQLQFLT TTADHHQNLD  60
DTNMAEEYSN KDTVISSTTT NNNNLEEDEK GCKNKKGHDM SSSTITSTIN KNKINKSSKK  120
DRHSKITTAQ GPRDRRMRLS LDVARKFFNL QDLLGFDKAS KTVEWLLNKS KSAVKELEEG  180
TSTANIGGAI SASSTSECEV ISGIIDESAT NDIQKEQPII NSKKEKKKAK SSRIRAAINH  240
PVVAKESRKE ARARARARTL KKSLNIGDES KLCNEADTLR SWKPYEESGS QGYTNKENVV  300
DDPDLVVTTG NWSPFTIINF HHNTEISHEH QFTNFQLWEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001060.0JQ400106.1 Petunia x hybrida putative transcription factor (TCP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506815.11e-113PREDICTED: transcription factor DICHOTOMA-like
TrEMBLG0ZGI80.0G0ZGI8_PETHY; Putative transcription factor (Fragment)
STRINGPGSC0003DMT4000145722e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-29TCP domain protein 12