PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01734g02004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family G2-like
Protein Properties Length: 291aa    MW: 32286.6 Da    PI: 7.2374
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01734g02004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.32e-3449103155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Peinf101Scf01734g02004.1  49 KPRLRWTNELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 103
                               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-3346104IPR009057Homeodomain-like
PROSITE profilePS5129412.90346106IPR017930Myb domain
SuperFamilySSF466898.24E-1848106IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-2549104IPR006447Myb domain, plants
PfamPF002491.5E-851102IPR001005SANT/Myb domain
PfamPF143791.5E-26147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MYSTLPIRNM GMEGTGDFIH HHHSLQNSLS VDGTNLPGDA CLVLTTDPKP RLRWTNELHE  60
RFVDAVTQLG GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSAKE ATDNSKDVSC  120
PAESQDTGSS TSGSSRVIPQ DINDGLQVTE ALRVQMEVQR RLHEQLEVQR RLQLRIEAQG  180
KYLQSILEKA CKAFNSQSLE SNGLEVNREE LSELAMKVVN DCEGIVSVPS LPEITPCIDN  240
KNACHVPARL GDCLPSNGVG DLKKRPRAFT NVNGLPMESN TRQVEWMMSN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1949105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1949105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1949105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1949105157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-41HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755212e-41HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619229.10.0PREDICTED: protein PHR1-LIKE 3 isoform X1
SwissprotQ94A571e-117PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1S3YR420.0A0A1S3YR42_TOBAC; myb family transcription factor APL-like
TrEMBLA0A1U7YCC60.0A0A1U7YCC6_NICSY; myb family transcription factor APL-like
STRINGXP_009619230.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-115G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]