PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01705g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 448aa    MW: 49572.4 Da    PI: 8.0536
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01705g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17146195155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Peinf101Scf01705g00017.1 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 195
                               78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9146195IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16146204IPR016177DNA-binding domain
PROSITE profilePS5103217.899147203IPR001471AP2/ERF domain
CDDcd000182.89E-11147202No hitNo description
SMARTSM003802.7E-32147209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-17147203IPR001471AP2/ERF domain
CDDcd000186.12E-11238281No hitNo description
SMARTSM003801.3E-7239287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLDLNVSAVS VNSNCDETDP YNNTNTFLKD DISGTSNTDS SSVVNAVVGD EDSNSSSHQH  60
VFKHSLSTLS FSILKSDRVM ETEDDMTSDD YKTRQLFPVK MEAKIQDQAQ CWLNLSVPES  120
RCGADIGTYK PPPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH  180
AAARAYDRAA IKFRGVDADI NFSITDYEED MKQMKNLSKE EFVQILRRQS TGFSRGNSKF  240
RGVTLQKCGR WEGRMGQLLG KKAYDKAAIT CNGREAVTNF EPNMYGREIK EDNKDGGSGE  300
NLDLNLWIAP PWEGPKGDEI GRNVHFKFGA GEMVIGKRLE IESSSTAPQG PPTASKCSIL  360
TGMYPGFSPH NWEGGMTKAE ATSSPGFPNW AWKIRSQGMA TPVPVFSSSA ASSGFSTTLY  420
PNSLLPPSNQ LRLPTNSTFP HPPMTLNI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230547.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK032e-88RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A314KJ350.0A0A314KJ35_NICAT; Ethylene-responsive transcription factor rap2-7
STRINGXP_009600856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-85related to AP2.7