PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01705g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 406aa    MW: 46543.4 Da    PI: 6.8727
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01705g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.75.8e-441142642133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 
                               +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++  aikel ++                +    
  Peinf101Scf01705g00002.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSENmpqkgyfdegnkinnsN---- 194
                               79**************************************************************88888777664443221.... PP

                       TCP  71 seceaesssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                 +    ssss+++s+ +              +  +s+++ k++ k  + + n++k esr kar+rarert+ekm+ k
  Peinf101Scf01705g00002.1 195 --M----SSSSEGKSHDEslmseceevvsrweE--NSNNEVKEKGKLREIVDNPHKrESRYKARERARERTKEKMMVK 264
                               ..1....11111111111345566667776432..3333555555566666999999******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-45114262IPR005333Transcription factor, TCP
PROSITE profilePS5136934.883116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.148243260IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFPQSNNDEP FLYTSKTFLE RSFTYDHHNP SSSSRHEDYP FLLNFPSPYL DNHELPLSQI  60
LPQQHQELEV IHHGMEAYPS KAHISGDTSA VEMSGEAKTS SKKRNLGATP RRRTGKKDRH  120
SKICTAQGVR DRRVRLSLHI ARKFFDLQDI LGFDKASKTI EWLFSKSYDA IKELSENMPQ  180
KGYFDEGNKI NNSNMSSSSE GKSHDESLMS ECEEVVSRWE ENSNNEVKEK GKLREIVDNP  240
HKRESRYKAR ERARERTKEK MMVKGLEKCK EWYEKNPNNI PDQLGSSSNT SGFLEESNKS  300
NSYNTCSVNQ EKGSPHEASS QSLEHQFANS GIIDENYSTT GGIDSGNCFM SFPGNWEMIN  360
FAPMPNVVQI PYAGNPSSIY NLANSSYQYQ SLDQEKHLSF RHHRLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2742490.0JF274249.1 Petunia x hybrida TCP1 gene, complete cds.
GenBankKR0021030.0KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366063.11e-171PREDICTED: transcription factor TCP12
TrEMBLG0ZGI60.0G0ZGI6_PETHY; Putative transcription factor
STRINGPGSC0003DMT4000193241e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-29TCP domain protein 12