PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01590g05014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 433aa    MW: 48202.8 Da    PI: 8.3205
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01590g05014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.8e-1382138155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Peinf101Scf01590g05014.1  82 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 138
                               57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-982138IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1582147IPR016177DNA-binding domain
SMARTSM003805.3E-1983152IPR001471AP2/ERF domain
PROSITE profilePS5103218.51883146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-1283147IPR001471AP2/ERF domain
PRINTSPR003674.4E-58495IPR001471AP2/ERF domain
PRINTSPR003674.4E-5128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MFCSLAGTPL LMASPSSEPT AKPEGSSGND AGGGETSEAM GSIGTDQLLL YRGLKKAKKE  60
RGCTAKERIS KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQGAYD  120
DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREDYLASLR RKSGGFSRGI  180
SKYRPLSSRW DLQCGRVPGA DYFNSLHYGD DATVDNEYIG GFCMDRKIDL SSYIKWWGGN  240
KARQTDIHLK MSEETKVGCP EDIDNELRAS ELSIKQTEPY EMPRLGVNQE RKNHKSSAFS  300
AMSILSQSAA YKSLQEKVSK KKEKVENDEN ENKSTIIRLD RGKTIEKSSP DSGNERLGAA  360
FLNAGGSSIN RNLHPLTPLL SAPLLTNYNS IDPLTDPLLW TSLAPIFHTG SSRTAEVHKS  420
EASSDYTFFQ QED
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783849.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-153AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-132AP2 family protein