PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01533g02007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26184.7 Da    PI: 5.101
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01533g02007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-204193456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              R++f++eq++ Le++Fe ++ p  +++++LAk+lgL+ rqV +WFqN+Ra+ k
  Peinf101Scf01533g02007.1 41 RRRFNDEQIRSLENMFETESRPELRTKQQLAKRLGLQPRQVAIWFQNKRARSK 93
                              99*************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-182597IPR009057Homeodomain-like
PROSITE profilePS5007117.673595IPR001356Homeobox domain
SMARTSM003896.7E-173799IPR001356Homeobox domain
CDDcd000868.89E-164196No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1841102IPR009057Homeodomain-like
PfamPF000461.1E-174193IPR001356Homeobox domain
PRINTSPR000318.8E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000318.8E-67591IPR000047Helix-turn-helix motif
PfamPF021833.6E-1495135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSVGEMPPI NSSMWNQSSL LGNDLNLHTM SSINKCKDNL RRRFNDEQIR SLENMFETES  60
RPELRTKQQL AKRLGLQPRQ VAIWFQNKRA RSKSKQLEME YRMLKISYDN LGSKYELLKK  120
ENESLQIQLQ RLRKLTEKGG NKEIPNEGKP LETEVKPKFV PETCSPEFGL PLCEDSREID  180
YLGPESDILN MAQIADGLSE IENECNFESR TFLDDSDCRS PLWEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796883.11e-145PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLK4CPV95e-96K4CPV9_SOLLC; Uncharacterized protein
STRINGSolyc08g083130.2.12e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-39homeobox 7