PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01468g09007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 734aa    MW: 85014 Da    PI: 6.5727
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01468g09007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.41.6e-3038129291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                               fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++g+w+v++++++
  Peinf101Scf01468g09007.1  38 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIHDSGTWVVSNFVKD 122
                               9***************************************998888545677889****************************** PP

                      FAR1  85 HnHelap 91 
                               HnH+l+p
  Peinf101Scf01468g09007.1 123 HNHDLVP 129
                               ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-2938129IPR004330FAR1 DNA binding domain
PfamPF105514.0E-31250342IPR018289MULE transposase domain
PfamPF044341.0E-11518564IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263530566IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MENEVMEFDD DDDDVDHYFD LEPYDGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK  60
DGAIIQRSFV CAKEGFRNLN EKRTKDREIK RPRTITRVGC KAALSVKIHD SGTWVVSNFV  120
KDHNHDLVPP DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT  180
EVDCRNYMRN NRQRSLEGDI QLLLDYLKQM HSHNPGFFYA VQGDDDQCMG NVFWADSKAR  240
DNYTYFGDTV TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GSAFLINESE ASFVWLFNTW  300
LAAMSGQPPL SVTTDHDAVI RSAIMQVFPD TRHRFCKWHI FKKCQEKLSH VFLEHPNFEA  360
DFHKCVNLTE STEEFESCWL SLVDKYDLRD HDWLQAIYLD RRQWVPVYLR DAFFGEMSIT  420
QRSDSMNSYF DGYVNASTNL NQFFKLYEKA MESRIEKEVK ADYDTMNTFP VLRTPSPMEK  480
QASEVYTRKL FMRFQEELVG TLTFMANKVE DDGLVTTYQV EKFGDDHRAY YVRFNVLEMK  540
ATCSCQMFEF SGLLCRHVLA VFRVTNVLTL PSHYILKRWS RSAKSSVALE DRVADVINYY  600
LESHTVRYNI LRHEAFKFVE EGAESIDSYT VAMAALEDAS KKVALAAKRD GRISLVNGHC  660
RDNLTRNGVH ANYNIEDEYR NLACPLSEYI ITNFSLVLEA FLLDLLWVKR VYLTGMSVHD  720
HVSVFNWSTG VYTS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263777.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
RefseqXP_019263778.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3ZA490.0A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7V9U10.0A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRINGXP_009758605.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]