PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01452g15014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family RAV
Protein Properties Length: 334aa    MW: 38871.9 Da    PI: 7.5617
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01452g15014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-134896156
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              s++kGV     +grW A+I+       +kr++lg+f +++eAa a++ a+ +l+ge
  Peinf101Scf01452g15014.1 48 SRFKGVV-GQHNGRWGAQIYA------NKRIWLGTFKSEKEAAMAYDSAAIRLRGE 96
                              6899996.4458*******99......8**********99**************97 PP

2B389.52.6e-28165258183
                               EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                               f k+ltpsdv+k++rlv+pkkfa +h           ++++ e+ +l+++d+s r W+++++y+k+s+++v+t+GW++Fvk++ L
  Peinf101Scf01452g15014.1 165 FTKELTPSDVGKLNRLVIPKKFALKHfpqvigkvdncENQEFEDSELVFYDTSRRLWKFRYCYWKSSQSFVFTRGWNRFVKDKSL 249
                               89*****************************99999977777899**************************************** PP

                               -TT-EEEEE CS
                        B3  75 kegDfvvFk 83 
                               k++D++vF 
  Peinf101Scf01452g15014.1 250 KAKDTIVFN 258
                               ********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-74896IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1648104IPR016177DNA-binding domain
CDDcd000184.16E-2448105No hitNo description
PROSITE profilePS5103217.2849103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1849103IPR001471AP2/ERF domain
SMARTSM003803.9E-2149109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.7E-32162259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27163261IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-27164276No hitNo description
PROSITE profilePS5086313.126165281IPR003340B3 DNA binding domain
SMARTSM010191.9E-20165281IPR003340B3 DNA binding domain
PfamPF023629.3E-25165258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPIIHSMEDV ISSTTTYATE NSSESSNNNQ LHTKKRPRDE GKACNSTSRF KGVVGQHNGR  60
WGAQIYANKR IWLGTFKSEK EAAMAYDSAA IRLRGEDSHR NFPWTNLTLL EPSFQGQFST  120
EDILRMIKDG SYPSKFDEFL KEKYEENHPL NTLQGNEVFS YKQLFTKELT PSDVGKLNRL  180
VIPKKFALKH FPQVIGKVDN CENQEFEDSE LVFYDTSRRL WKFRYCYWKS SQSFVFTRGW  240
NRFVKDKSLK AKDTIVFNSC EYKIGPDEIY NVFVIDVVKA NEVLPKASEF HLQQAIEYDH  300
EVETKECIMK IQSADRVVEP VMLFGQQIGW TERQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2616425813101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771974.11e-146PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_016492322.11e-146PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-85RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX11e-145A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE01e-145A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009771974.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-87RAV family protein