PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01452g05007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 352aa    MW: 37645.8 Da    PI: 4.8851
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01452g05007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.7e-37801843107
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                                +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++  +++ +       
  Peinf101Scf01452g05007.1  80 LAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGTLKI------ 158
                               689************************************************************8888844421111111...... PP

                       TCP  87 sg......kaaksaakskksqksaasa 107
                                +      +++ ++ k++++++ ++++
  Peinf101Scf01452g05007.1 159 -PttspatNNEVENLKKRRKRAANSEF 184
                               .11111112223333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3084177IPR005333Transcription factor, TCP
PROSITE profilePS5136927.34285139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0031347Biological Processregulation of defense response
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASIENKQNS EQEDEEKMLS PDDPLLGDSH EYTISAVGNV TDTEGGVGQM LKEEQEDDDN  60
NNNNNVGLNM QLAKVEPKPL AKRSSKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS  120
DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGTLKIPT TSPATNNEVE NLKKRRKRAA  180
NSEFYDVHDH DQSSFAPVAP IAAPQGLLPV WTMGSSNGLV PTTAGTFFMY PPSAGPSNQP  240
QLWATPIFNV PGRPISNYVS AMQPGISYAA AGVCGGEVQG SSSNSDGSGD KLVNVVSTMA  300
PSSSSISGTT TAATSTTQML RDFSLEIYDK RELQFMVGSV SSENDQSPSS KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362699.11e-164PREDICTED: transcription factor TCP19
SwissprotO646472e-75TCP9_ARATH; Transcription factor TCP9
SwissprotQ9LT896e-76TCP19_ARATH; Transcription factor TCP19
TrEMBLM1C8W51e-164M1C8W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000623271e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.27e-74TCP family protein