PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g07007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 78aa    MW: 8839.98 Da    PI: 8.8846
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g07007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11851344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT+ E +++ +a + + ++   +W  Ia+++g g++ +++k ++
  Peinf101Scf01427g07007.1  8 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVKQHY 51
                              7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.845459IPR017884SANT domain
SMARTSM007178.2E-10557IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-14862IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-7852IPR009057Homeodomain-like
PfamPF002495.9E-10851IPR001005SANT/Myb domain
CDDcd001672.53E-9851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GKSVEEVKQH YEILIEDLKH  60
IESGGVPFPI YKSGGKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-31175177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488839e-68GU048883.1 Capsicum annuum clone BAC CaCM303O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562162.11e-46PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8FSL32e-45A0A1U8FSL3_CAPAN; Transcription factor RADIALIS
TrEMBLA0A2G2XGW12e-45A0A2G2XGW1_CAPBA; Transcription factor RADIALIS
TrEMBLA0A2G3AAH42e-45A0A2G3AAH4_CAPAN; protein RADIALIS-like 1
TrEMBLA0A2G3D7X72e-45A0A2G3D7X7_CAPCH; Transcription factor RADIALIS
STRINGXP_009603278.13e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-35RAD-like 6