PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01427g07003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ZF-HD
Protein Properties Length: 312aa    MW: 35182 Da    PI: 8.1298
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01427g07003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1023.9e-32103159360
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                               +v+Y+eCl+NhAa++Ggh++DGCgEfmps geegta+ lkCaAC+CHRnFHR+e+e+e
  Peinf101Scf01427g07003.1 103 SVKYRECLQNHAATMGGHVLDGCGEFMPS-GEEGTAEYLKCAACDCHRNFHRKETEDE 159
                               689*************************9.999*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-20103157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-30104156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-29105155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.768106155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.77E-16243309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-27246310IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-25248305IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEHRSQEKDM GMPNSLGYNP SHLNNQESSS SAASKIPTTP ILSSIQDGKT NEQVGHGNTI  60
ISPNQTLEHQ HNLIQNSDLD PHTTAQLRQQ SSTTSASDHR TISVKYRECL QNHAATMGGH  120
VLDGCGEFMP SGEEGTAEYL KCAACDCHRN FHRKETEDES QTPGVRRNNS INNNHHIHTQ  180
VPPSIPHPPV QQHQNKYSHN YSRGPVPTVM MNFGGNIGIP AESSSEDLNM FHTNVGGQGV  240
MQPCNFSKKR FRTKFTQQQK DRMQEFAEKL GWRIQKQDEQ EVQQFCNDVG VKRQVFKVFM  300
HNSKQAIKRK QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202493041873ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603276.10.0PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_016451406.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW73e-66ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLM0ZVH11e-153M0ZVH1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000090331e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-64homeobox protein 24