PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01310g01017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 484aa    MW: 53803.4 Da    PI: 6.9923
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01310g01017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17164213155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Peinf101Scf01310g01017.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                               78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9164213IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-16164222IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-17165222IPR001471AP2/ERF domain
CDDcd000181.47E-11165223No hitNo description
PROSITE profilePS5103217.794165221IPR001471AP2/ERF domain
SMARTSM003808.0E-33165227IPR001471AP2/ERF domain
CDDcd000183.31E-13256301No hitNo description
SuperFamilySSF541712.09E-6256300IPR016177DNA-binding domain
SMARTSM003805.7E-13257305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVGKITV ADESGTSNSS LRNAEASSSA GDDDTCSTRA AGDLFAFNFD  60
ILKVGGAETS RSCCNNDDEE VYDENHVRMA RPDVVTQQFF PVDIAESNRA HHTSRRPDWV  120
DLSYDPPNTV GLREVGIVHP QQQQYQQQQQ PVKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF NLSDYDEDMK QMKNLSKEEF  240
VHMLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN GREAVTNFEP  300
STYEGETISD PRSEGSQQDL DLNLGISTSS AKEIERSGSF QYHPYDMQDA TKLQMDKSGP  360
AIVSSSHFKA QSMTSEQAHL WNGVYSNFFP SYEERASGKR VEVGSSQGPP SWIMQMHGQV  420
GTTPMSMFTA AASSGFSSPA TIASASPISG PNPNIHNLSF ATYSTASTNT SQYFYQIRPP  480
LPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784820.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_016501409.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A220QTH60.0A0A220QTH6_PETAX; AP2-like ethylene-responsive transcription factor
STRINGXP_009784819.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-107related to AP2.7