PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01294g02073.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 142aa    MW: 16236.5 Da    PI: 7.2581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01294g02073.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44e-092658238
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38
                              ++ GVr ++ +g+W AeI+d +    +  r +lg+f t
  Peinf101Scf01294g02073.1 26 KFVGVRHRP-SGKWIAEIKDTT----KdIRLWLGTFET 58
                              899***999.7*********43....35********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.8382658IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-82659IPR016177DNA-binding domain
CDDcd000183.15E-132658No hitNo description
Gene3DG3DSA:3.30.730.103.8E-122658IPR001471AP2/ERF domain
SMARTSM003800.00112680IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKKLTKFKGR KRSNNTSSSS SSSSNKFVGV RHRPSGKWIA EIKDTTKDIR LWLGTFETIL  60
VLVLVVFDQG LEFAQQLFDF PKNVTLDESK DDIGFTEFER MKVERQISAS LYAVNGVQEY  120
METMYDPSES LWDLSTLCSS LC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2378752e-36AC237875.1 Solanum tuberosum cultivar RH89-039-16 clone RH168B16, complete sequence.
GenBankHG9755222e-36HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757570.13e-30PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_016475325.13e-30PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_019264096.13e-30PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY884e-19ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A103YG113e-44A0A103YG11_CYNCS; AP2/ERF domain-containing protein (Fragment)
STRINGXP_009757570.11e-29(Nicotiana sylvestris)
STRINGOBART07G19610.12e-30(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2486422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-15related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]