PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01142g05058.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 182aa    MW: 20895.4 Da    PI: 8.8335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01142g05058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19753252
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                              +y+GVr+++ +g+Wv+eIr+ps    ++r++lg+f tae+Aa+a+++a++ 
  Peinf101Scf01142g05058.1  7 RYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTFETAEDAARAYDEAARL 53
                              69******9.**********944...5*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.39E-35666No hitNo description
PfamPF008471.1E-11752IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-34764IPR001471AP2/ERF domain
SMARTSM003801.2E-40770IPR001471AP2/ERF domain
PROSITE profilePS5103221.272764IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-21766IPR016177DNA-binding domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTRPQQRYRG VRQRHWGSWV SEIRHPSLKT RIWLGTFETA EDAARAYDEA ARLICGPRAR  60
TNFPYNANEH SQSSSATRFL SSALIAKLQR CHMTSLTMSK RHGMTKLEDK NNQTSPNRNR  120
GHSITKRDGE LMGVEMQVNK GYNEGHGESA DQFKSLEDEH IQQMIEELLD YGSIELCSVL  180
KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-18868667ATERF1
3gcc_A9e-18868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8897413e-57AB889741.1 Solanum lycopersicum ERF52 mRNA for AP2/ERF transcription factor SlERF52, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473393.13e-87PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-66ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4A9S68e-86A0A1S4A9S6_TOBAC; ethylene-responsive transcription factor ERF003-like
STRINGXP_009773910.13e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-57ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]