PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01034g03001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 320aa    MW: 36328.7 Da    PI: 8.4456
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01034g03001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.53.3e-44401902133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 
                               +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++  aikel ++                +    
  Peinf101Scf01034g03001.1  40 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSENmpqkgyfdegnkinnsN---- 120
                               79**************************************************************88888777664443221.... PP

                       TCP  71 seceaesssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                 +    ssss+++s+ +              +  +s+++ k++ k  + + n++k esr kar+rarert+ekm+ k
  Peinf101Scf01034g03001.1 121 --M----SSSSEGKSHDEslmseceevvsrweE--NSNNEVKEKGKLREIVDNPHKrESRYKARERARERTKEKMMVK 190
                               ..1....11111111111345566667776432..3333555555566666999999******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-4540188IPR005333Transcription factor, TCP
PROSITE profilePS5136934.88342100IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.148169186IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEAYPSKAHI SGDTSAVEMS GEAKTSSKKR NLGATPRRRT GKKDRHSKIC TAQGVRDRRV  60
RLSLHIARKF FDLQDILGFD KASKTIEWLF SKSYDAIKEL SENMPQKGYF DEGNKINNSN  120
MSSSSEGKSH DESLMSECEE VVSRWEENSN NEVKEKGKLR EIVDNPHKRE SRYKARERAR  180
ERTKEKMMVK GLEKCKEWYE KNPNNIPDQL GSSSNTSGFL EESNKSNSYN TCSVNQEKGS  240
PHEASSQSLE HQFANSGIID ENYSTTGGID SGNCFMSFPG NWEMINFAPM PNVVQIPYAV  300
WKNYPNGVFG LLILIMVIFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001040.0JQ400104.1 Petunia x hybrida putative transcription factor (TCP1) mRNA, complete cds.
GenBankJF2742490.0JF274249.1 Petunia x hybrida TCP1 gene, complete cds.
GenBankKR0021030.0KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574613.11e-124PREDICTED: transcription factor DICHOTOMA-like
TrEMBLG0ZGI60.0G0ZGI6_PETHY; Putative transcription factor
STRINGPGSC0003DMT4000193241e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-30TCP domain protein 12