PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01026g07012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family SBP
Protein Properties Length: 140aa    MW: 15896.7 Da    PI: 8.5064
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01026g07012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1352.4e-4256131277
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               Cqve+C+ad+++ak yhrrhkvCe+h+k+p+vl+ g++qrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++
  Peinf101Scf01026g07012.1  56 CQVENCSADMADAKAYHRRHKVCEFHAKSPAVLIGGHQQRFCQQCSRFHLLAEFDEAKRSCRRRLAGHNERRRKSS 131
                               **************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375751.0E-561140IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.0E-3548117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.71853130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3954133IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3256129IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
METGNLVGKR SMNKAEMEEE DDDKDENVEE DTKRKRVLTR SGRKVSTGEG SKQPSCQVEN  60
CSADMADAKA YHRRHKVCEF HAKSPAVLIG GHQQRFCQQC SRFHLLAEFD EAKRSCRRRL  120
AGHNERRRKS SCDSPGEGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-36561291184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7179631e-175KT717963.1 Petunia x hybrida squamosa promoter-binding protein 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622641.14e-68PREDICTED: squamosa promoter-binding protein 1
RefseqXP_016433751.14e-68PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387413e-52SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2K9ZXP72e-98A0A2K9ZXP7_PETHY; Squamosa promoter-binding-like protein
STRINGXP_009622640.11e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-42squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]