PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00982g03006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 754aa    MW: 85763 Da    PI: 6.8101
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00982g03006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.41.6e-3032121291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                               fYn+YA+++GFs+r+ + ++s+r++ i +r +vCs+eg++++e+++ +++rr+r+++rtgCka++++k+++ +gkw +tkl+++H
  Peinf101Scf00982g03006.1  32 FYNSYARRAGFSTRVGAYRRSRRDDAISTRILVCSMEGFTAPEDSS-KERRRQRTTSRTGCKAHMNIKRHHpSGKWAITKLVKDH 115
                               9*******************************************99.999*********************************** PP

                      FAR1  86 nHelap 91 
                               nHel+p
  Peinf101Scf00982g03006.1 116 NHELVP 121
                               ****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-2732121IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24243329IPR018289MULE transposase domain
PROSITE profilePS5096610.954527559IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-10531558IPR007527Zinc finger, SWIM-type
SMARTSM005758.8E-9534561IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MEPLSLNEEE EDDDQNPYEG MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST  60
RILVCSMEGF TAPEDSSKER RRQRTTSRTG CKAHMNIKRH HPSGKWAITK LVKDHNHELV  120
PPDKVHILRS HRHISGPARS LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM  180
SQCRQKRALG SGAQSIFDYL KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG  240
DTVTFDTTGR TQRYRVPFAP FIGVNHHCQP VLFGCALLLN ESKSSFVWLF QTWLAAMSGR  300
HPVSITTDHD TIIRSAISEV FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN  360
LTETIEEFEL CWESLLGKYT LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN  420
SFFDGYIDAL TNIHVLITQY EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT  480
REMFLMFQQE LMATLAYPAA VINDTGSHVV YHVAKFGEDH KVHYVKYSVF EKKASCSCQM  540
FEFSGIPCRH ILATFRVKNV LKLPSHYVLK RWTRKAKSEI VLDEDDLGLP SSDNESFTAR  600
FEKLSLEAMK YVKEGADSKD VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL  660
NGNQADCGHS CLVSQDEKIQ ELTTAVVNAT EICEAYQAKL LSILREMEEQ KLRISLKDWM  720
CYPLAMAEDY DVTVFVYMVE LDPTLELYLG RPGN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231145.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3ZJB90.0A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009798613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]