PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00931g03016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 435aa    MW: 48332.2 Da    PI: 6.3883
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00931g03016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17130179155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Peinf101Scf00931g03016.1 130 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 179
                               78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-12130189No hitNo description
PfamPF008471.9E-9130179IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-16130189IPR016177DNA-binding domain
SMARTSM003801.2E-31131193IPR001471AP2/ERF domain
PROSITE profilePS5103217.82131187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-17131188IPR001471AP2/ERF domain
CDDcd000183.54E-13222267No hitNo description
SuperFamilySSF541711.37E-6222267IPR016177DNA-binding domain
SMARTSM003803.0E-13223271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MFDLNLCFED EEELQFDNHN NSTETSNNSS SIINNIETTT TSSTCDDHDY ISYSNNNNNN  60
NSFVDFLKTD NDQFLVTKEL FPLSNGGETA ATVNVYGNYG GSMEQRIIVP VQQQQQQVKK  120
SRRGPRSKSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGL  180
DADINFNVSD YQDDLKQMMN FTKEEFVHIL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG  240
QFLGKKAYDK AAIKCNGREA VTNFELSTYE EELSTEPDNG GAIHNLDLNL GIASSSLADN  300
QHGDTCLIGP SEFQCASIGL PEYRGAMNSP CTTMGSKLPH GRHLLWNGVN TSVFPTFKGT  360
AIGKGMEVDS SPNWTWQDQN LYGGSSSVPL FSTAASSGFA NSTTAAAHQP CFSTGPLPYH  420
HSPSLANMNF AHYYC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1320020.0AF132002.1 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018627724.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-89RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLQ9XHD30.0Q9XHD3_PETHY; PHAP2B protein
STRINGXP_009606014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-81related to AP2.7