PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00887g04005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 155aa    MW: 17627.7 Da    PI: 6.1494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00887g04005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-142441055
                       AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Peinf101Scf00887g04005.1  2 RKWGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 44
                              46**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.137152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-25153IPR001471AP2/ERF domain
CDDcd000188.62E-24154No hitNo description
SMARTSM003806.0E-29158IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17253IPR016177DNA-binding domain
PfamPF008472.6E-8244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPVA AARAYDTAVY YLRGPSARLN FPELLVGDDI  60
INSGGLNDLS AASIRKKAIE VGAQVDAVQN SLATHQHVLD HDLDHDHGHN RDHLQETVVK  120
CETNESPSKL KPCWFQEKPD LNLKPEPEDP EMDYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-112522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339868.14e-79PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221741e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0V0INJ89e-78A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like
TrEMBLM0ZXP89e-78M0ZXP8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102282e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-47DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]