PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00871g06005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 209aa    MW: 22629.8 Da    PI: 9.3639
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00871g06005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.8e-3554125676
                       TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eae 76 
                               ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+pai+++tgt++ +a+ + +++
  Peinf101Scf00871g06005.1  54 SSTKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRHAEPAIIAATGTGTVPATTVlTTA 125
                               689*********************************************************999996654333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3055132IPR005333Transcription factor, TCP
PROSITE profilePS5136927.2156110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGSEMVLHHH QFSNTNQPHD NEVALMAGNM TTNDKKALMV VSKKRNNSSL SVSSSTKDRH  60
TKVNGRGRRV RMPALCAARV FQLTKELGHR TDGETIEWLL RHAEPAIIAA TGTGTVPATT  120
VLTTAEGMKS TPSVLAPVSR STAVSGFPMG GCGVFPMTGN PSCRLDLEFS NGYRHMPFTA  180
LLLQPVNSTA ADDGGEEKPM VRDEEKQIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496827.13e-78PREDICTED: transcription factor TCP11-like
SwissprotQ9SJK78e-38TCP11_ARATH; Transcription factor TCP11
TrEMBLG3BGV99e-80G3BGV9_SOLLC; TCP transcription factor 19
STRINGSolyc09g008030.1.14e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.13e-29TCP family protein