PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00782g12011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 497aa    MW: 56779.3 Da    PI: 4.7192
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00782g12011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.92e-521294962373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL +  ea++++++ela+ ++  ++   +p g++++R+ +     L a++ +      +    +++   +s++   a+k+f++
  Peinf101Scf00782g12011.1 129 HHLLAAYGEAIENDHKELAEVIIRSIKGKINPLGESLERVCS----NLFAKIED------QESYLKQE---SSKNLEVAFKAFYQ 200
                               799999*********************************986....58889998......22222333...35666778999*** PP

                      GRAS  87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               ++Pi kf+h++aN+aI ea+ ++ e++Hi+Dfd+++G+QWp+ ++a++++++    lR T +++ e++   +  + eet++rL +
  Peinf101Scf00782g12011.1 201 IFPIGKFAHFAANSAIIEAMPSDaETIHIVDFDMGEGIQWPSVIEAMSQKRK---ALRFTSIKKTEEEstsDLCKFEETKRRLLD 282
                               ********************98889***********************9865...5******99888777677789********* PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvve 243
                               +A+++   ++ +v  + ++e+l+ ++ r+k+     E l+ n++++l ++ +    ++    e+Lkl k+l ++     +v++ +
  Peinf101Scf00782g12011.1 283 YAKTVPFGLRLQV-EEMTTEELSSDMRRMKKrgkgSEWLVFNCMFKLPHMGKTMCRIQA--LEFLKLAKELLANssrkgLVTFGD 364
                               ***9888888887.7779999988888888888999**************955555555..9********9765445559***99 PP

                      GRAS 244 qe....adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                e     +h n++++   f ++l yy ++f+sle  +p+   e+r  +E  +l++++++    ++ e      ++ + ++  +e 
  Peinf101Scf00782g12011.1 365 GEamdeNSHnNTSTLSSFFNKKLIYYQSIFESLECYFPAYLaEARLAMESLFLAPQVCSFSWLQNWE------EMTSMSNSCGEI 443
                               87433334557779999999*****************99877***************9988777776......6777789***** PP

                      GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                               G++  ++s+++  qak l+++ +     ++e e+s+++vl Wk+ pLv vS W
  Peinf101Scf00782g12011.1 444 GLQGKTISQENLLQAKELVNERAtPLKVKIEeERSHQMVLEWKGTPLVKVSTW 496
                               *********************995444777756699999************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.341102475IPR005202Transcription factor GRAS
PfamPF035146.9E-50129496IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMQSEQLLHN SWSSTFHQSD LYGIQIDPYE SQKHSLSYSS FNSNDQDFTS LFQDDVFDDL  60
SMDDLEFVDV CRWLNDSESE GNEKMKVSFD IQKDGDLWSP ALSGVSSETS ITLPSTNSKE  120
NMDTQMSLHH LLAAYGEAIE NDHKELAEVI IRSIKGKINP LGESLERVCS NLFAKIEDQE  180
SYLKQESSKN LEVAFKAFYQ IFPIGKFAHF AANSAIIEAM PSDAETIHIV DFDMGEGIQW  240
PSVIEAMSQK RKALRFTSIK KTEEESTSDL CKFEETKRRL LDYAKTVPFG LRLQVEEMTT  300
EELSSDMRRM KKRGKGSEWL VFNCMFKLPH MGKTMCRIQA LEFLKLAKEL LANSSRKGLV  360
TFGDGEAMDE NSHNNTSTLS SFFNKKLIYY QSIFESLECY FPAYLAEARL AMESLFLAPQ  420
VCSFSWLQNW EEMTSMSNSC GEIGLQGKTI SQENLLQAKE LVNERATPLK VKIEEERSHQ  480
MVLEWKGTPL VKVSTWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-1213730828212Protein SCARECROW
5b3h_A3e-1213730827211Protein SCARECROW
5b3h_D3e-1213730827211Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463435.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_018632222.10.0PREDICTED: nodulation-signaling pathway 2 protein-like isoform X1
TrEMBLA0A1S3ZG460.0A0A1S3ZG46_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-22RGA-like protein 3