PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00774g04001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 560aa    MW: 64116.5 Da    PI: 8.376
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00774g04001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR196.14e-3080174291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                               fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r e++k       ++ +r+raetr+gCka+l+vk +++gkw+ + +
  Peinf101Scf00774g04001.1  80 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKEKPgrdggGSRVKRPRAETRVGCKAMLVVKIQDSGKWVASGF 164
                               9*****************************************99999999999999***************************** PP

                      FAR1  82 eleHnHelap 91 
                               ++eHnHel+p
  Peinf101Scf00774g04001.1 165 VKEHNHELVP 174
                               ********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-2880174IPR004330FAR1 DNA binding domain
PfamPF044341.0E-10202248IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.115214250IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-8225252IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEFEHLGIGN DVIEFDMLGI GAGVDDTIDI EHPSEESGDK RLTDPFDGRS FSEVHVPEGD  60
MNLEPYEGME FESEEAAKAF YNSYARRVGF STRVSMSRRS RRDGAIIQRS FVCAKEGFRV  120
EKEKPGRDGG GSRVKRPRAE TRVGCKAMLV VKIQDSGKWV ASGFVKEHNH ELVPPDKFQE  180
ELVETLTFLA TKVDDKEATM TFQVTKFGES YKSYSVHYNV RDIKASCSCQ MFEFSGLLCR  240
HILTVFRVTN VLTLPPCYVM KRWTRNAKSG VMLEERTFNL SNSCQESFTV RYNNLQHEAL  300
KYVDEGVKDE ECYKVARDAL QEAANKAAIA KTADLEVSNS SGPFKGESAA WESHVNNPFK  360
ARQSSADPST PMDERDKKIQ KLTHKLERAR RKCEQYRANL LTVLKDIEQQ KLQLTVKDKL  420
FMAVIEIPLM DSRISTRNNE GGRRKYYCQK RRKEVNKEAA INVHLGFSLE KPIRKPRTKT  480
TRKNIMKKDQ KFNSSTSWLS YKTQTTSRNK DSKGVQTSKD WYSIPLSEYE IPGPIPDDLD  540
TFGRDDDILF NFWDNINLDT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631560.11e-130PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL83e-66FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A200PR821e-144A0A200PR82_9MAGN; FAR1 DNA binding domain
STRINGXP_009631560.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-62FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]