PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00772g05004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 144aa    MW: 16499.7 Da    PI: 10.8031
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00772g05004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08753144
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              r +WT++  +l+ +a +q+ ++   +W  +ar +g g+++ ++k ++
  Peinf101Scf00772g05004.1  7 RSSWTPQQNKLFERALAQFDKDtpdRWQNVARAVGCGKSADDVKRHY 53
                              789********************************99*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.446257IPR017877Myb-like domain
SMARTSM007173.2E-7659IPR001005SANT/Myb domain
PfamPF002499.3E-7753IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-12865IPR009057Homeodomain-like
CDDcd001675.48E-5953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MASGSVRSSW TPQQNKLFER ALAQFDKDTP DRWQNVARAV GCGKSADDVK RHYDILLEDL  60
RRIESGLVPL PSYTNRAAAE EQSLLTLGSV VPWIWSHSTF WRHQNRLRQI SQPLLPPRRA  120
PQRADLGRTL DFMRAFVARG VFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-24173173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261955.15e-45PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6JJL51e-43A0A1J6JJL5_NICAT; Protein radialis-like 5
STRINGXP_009779120.12e-43(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-31RAD-like 6