PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00728g02003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 221aa    MW: 24440.4 Da    PI: 5.8528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00728g02003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-182272155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Peinf101Scf00728g02003.1 22 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 72
                              68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-122272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-312381IPR001471AP2/ERF domain
SMARTSM003801.0E-332386IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-212381IPR016177DNA-binding domain
PROSITE profilePS5103222.9582380IPR001471AP2/ERF domain
PRINTSPR003671.3E-92435IPR001471AP2/ERF domain
CDDcd000185.24E-312482No hitNo description
PRINTSPR003671.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDKAQDLEAK KIKRNRDSSK HPVYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPNPEMAA  60
RAHDVAALSI KGNSAILNFP ELADLLPRPL TLSPRDIQAA ATKAAAMEKF DNINNNIVSS  120
VSPNNSATTT TSTSTCSSSV SSSNMSTSSS LSSLVSAIDL ATSEELTQII ELPRLGTNFD  180
EYKNDFVYSD QYSAAMEGWL YPDEDAGMIS SCFEPSSLWN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-181881973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263162.11e-105PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD39e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J6JEB91e-103A0A1J6JEB9_NICAT; Dehydration-responsive element-binding protein 3
STRINGXP_009767580.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]