PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00702g04002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 227aa    MW: 25817 Da    PI: 7.9416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00702g04002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-21116167155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ k++g
  Peinf101Scf00702g04002.1 116 SHYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFKMRG 167
                               79********.**********96554..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-15116167IPR001471AP2/ERF domain
CDDcd000182.40E-32116175No hitNo description
SuperFamilySSF541712.09E-23116177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-33117176IPR001471AP2/ERF domain
PROSITE profilePS5103223.933117175IPR001471AP2/ERF domain
SMARTSM003801.8E-38117181IPR001471AP2/ERF domain
PRINTSPR003677.6E-14118129IPR001471AP2/ERF domain
PRINTSPR003677.6E-14157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDCLDEYFAL EKIRNHLLTD FLSFGASVSS SSSESTNSTH NQTNFVNLES ESSISSSDCF  60
QYESKPETFI DLTSPKSSNN WKPSLKIDVN KFEWIDFSNS TEKNPIIRVE KTEEKSHYRG  120
VRQRPWGKYA AEIRDPKRRG SRVWLGTFDT AIEAAKAYDR AAFKMRGSKA ILNFPLEVGK  180
NMVVSSSAVD CGVKRPREAE EEKVVKKAER CKEELSWPLS PLSLIQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-31117178263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609421.12e-92PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803414e-43EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1S4AWP91e-90A0A1S4AWP9_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609421.19e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-44ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]