PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00678g04008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bZIP
Protein Properties Length: 373aa    MW: 41635.3 Da    PI: 5.6498
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00678g04008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-1186127242
                               XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
                    bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeaeN 42 
                               + +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ e 
  Peinf101Scf00678g04008.1  86 PTDKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQLEQ 127
                               5799***************************73455554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-882131No hitNo description
SMARTSM003382.6E-685145IPR004827Basic-leucine zipper domain
PfamPF001701.6E-787124IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.16387131IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-689128No hitNo description
PROSITE patternPS00036092107IPR004827Basic-leucine zipper domain
PfamPF141441.3E-28176250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNSSTYTQFV ASKRMGLCDP IHQIGMWGDF KGSSFPNSSA TLILEVENCL ENEMPIMENL  60
LGNEIEEPSH GTVGTSNRYE PQTSKPTDKV RRRLAQNREA ARKSRLRKKA YVQQLENSKL  120
KLLQLEQELE RAKQQGMYVG GGLDASQIDY SGTANSGIAA FEMEYGHWVE EQNKQTDDLR  180
SALHSQIGEI ELRILVEGCL SHYFDLFRMK ATAANADVLY LMSGTWKTSA ERFFFWIGGF  240
RPSELLKVLL PHLEPLTEQQ VGEVCNLTQS CQQAEDALSQ GMVKLHQILS EAVAAGTLGD  300
GSILPQMTAT IEKLEALVRF VNQADHLRQE TLLQMSCILT THQSAQGLLA LGEYFKRLRA  360
LSSLWANGPS ESA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX825440.0X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234614.10.0leucine-zipper transcription factor
RefseqNP_001305473.10.0TGACG-sequence-specific DNA-binding protein TGA-1A
RefseqXP_010319687.10.0leucine-zipper transcription factor isoform X1
RefseqXP_025886212.10.0leucine-zipper transcription factor isoform X1
RefseqXP_025886213.10.0leucine-zipper transcription factor isoform X1
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLQ436470.0Q43647_SOLTU; Leucine zipper transcription factor
TrEMBLQ94EX60.0Q94EX6_SOLLC; Leucine-zipper transcription factor
STRINGSolyc04g054320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-139bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]