PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00668g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 234aa    MW: 26410 Da    PI: 4.7469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00668g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-181363155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ykGVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+g
  Peinf101Scf00668g00008.1 13 PKYKGVRLRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAAQFCLRG 63
                              79******99.*******999833...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-121363IPR001471AP2/ERF domain
CDDcd000181.10E-291373No hitNo description
Gene3DG3DSA:3.30.730.103.0E-291472IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-201472IPR016177DNA-binding domain
SMARTSM003809.4E-321477IPR001471AP2/ERF domain
PROSITE profilePS5103221.6281471IPR001471AP2/ERF domain
PRINTSPR003671.5E-91526IPR001471AP2/ERF domain
PRINTSPR003671.5E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEGPVDQERR NEPKYKGVRL RKWGKWVSEV RLPNSRERIW LGSYDTAEKA ARAFDAAQFC  60
LRGPNAKFNF PENPPDIPRG QSLSPAEIQV VASQFANSYQ QRQEQVALPP HDDIEVMETN  120
SHVIKIDKEE ETSLSSTCNN HVGQMNTMDW SFLDMLESYP HASGPTDAPP LSSSSPHPQL  180
PSNESTTNFD FGYYPGLETL SSNLYSPTHF PPRTTYNNDG HENDDMSGNV YSQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1514711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615403.19e-90PREDICTED: ethylene-responsive transcription factor ERF018-like
SwissprotQ9S7L59e-44ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A314KZI31e-87A0A314KZI3_NICAT; Ethylene-responsive transcription factor erf017
STRINGXP_009615403.13e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]