PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00614g11014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 315aa    MW: 35127.9 Da    PI: 6.3714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00614g11014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-16109160155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Peinf101Scf00614g11014.1 109 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 160
                               89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0533080IPR001471AP2/ERF domain
PROSITE profilePS510329.2164674IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-64676IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-54775IPR001471AP2/ERF domain
PfamPF008477.2E-12109160IPR001471AP2/ERF domain
CDDcd000181.26E-24109170No hitNo description
SuperFamilySSF541716.54E-18109170IPR016177DNA-binding domain
PROSITE profilePS5103218.386110168IPR001471AP2/ERF domain
SMARTSM003806.0E-26110174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18110169IPR001471AP2/ERF domain
PRINTSPR003679.6E-5111122IPR001471AP2/ERF domain
PRINTSPR003679.6E-5150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAKLSQQKQK NSSNNIANDT TTANGTVLKV KRTRKTIPRD SPPQRAYDDE EAASHAYDLA  60
ALKYWGSDTI LNFPLSTYGK EIKEMEGQSR EAYIGSLRRK SSGFSRGVSK YRGVARHHHN  120
GRWEARIGRV FGNKYLYLGT YATQEEAATA YDMAAIEYRG QNAVTNFDLS RYMKWLRPNN  180
NNNVNEPNPN FETNTISTSN HSIGSTSTST STMTATSATT ILDPSLCQTQ PPSATSALGL  240
LLQSSKFKEM MEMALENDYS PAPVESNPPQ SSFPEDLKTY FDIQDSGCYG DQGEDLIFNE  300
INTFMQPVMQ FDFGA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793520.11e-164PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-81AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Y4121e-162A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009793520.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-64AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]