PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00559g04018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 421aa    MW: 47588.6 Da    PI: 7.2041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00559g04018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13257303354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h e+Er+RR+++N++f  Lr+++P+      ++++Ka+ L  Av YI++L
  Peinf101Scf00559g04018.1 257 LNHVEAERQRREKLNHRFYALRSVVPHV-----TRMDKASLLSDAVAYINEL 303
                               5899***********************8.....7***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-122872IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.8E-2873163IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.24E-13254307No hitNo description
PROSITE profilePS5088817.06254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-18255321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16258317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10258303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-16260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDELIFSSSS FLSIPALFSQ GNNQPSILQQ RLQYILKNQT DSWTYAIFWQ RSNDDDGRLI  60
LSWDDGHFHG TNKDVEWFYV MSLVHSFSVD EGVLGKAFST GSFVWLMGPQ QLRFCSCKRA  120
KEAYGHGIKT LVYIPTSNGV LELGSVDIIK ENWSLVQQAK SLFSSEHHEG GPVQFVNCLQ  180
EHGQNFESSS SKKEEPRQKK CEELVATSNP VSFPDAEQSD SDCQLLDHPV QKSRAASKKR  240
ASKKRGREPR EGCDKSLNHV EAERQRREKL NHRFYALRSV VPHVTRMDKA SLLSDAVAYI  300
NELKAKVDQL ESKLHSNSES VDNQSTTNSS PTLFRPVKKQ TLEIEVKIMG PEDAMIRVQS  360
ENVNNVSTRL MRALQDLELY VHHASISNVN NIVLQDIVVR VPQGLKTEDG LKAALLRSLD  420
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-24252312262Transcription factor MYC2
5gnj_B3e-24252312262Transcription factor MYC2
5gnj_E3e-24252312262Transcription factor MYC2
5gnj_F3e-24252312262Transcription factor MYC2
5gnj_G3e-24252312262Transcription factor MYC2
5gnj_I3e-24252312262Transcription factor MYC2
5gnj_M3e-24252312262Transcription factor MYC2
5gnj_N3e-24252312262Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462596.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S3ZE820.0A0A1S3ZE82_TOBAC; transcription factor MYC2-like
STRINGXP_009592442.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-72bHLH family protein