PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00559g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 502aa    MW: 55567.1 Da    PI: 6.1608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00559g02002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13318363454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI+ L
  Peinf101Scf00559g02002.1 318 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVAYINAL 363
                               799***********************8.....8***************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-5427217IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.96E-17306374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-14312367No hitNo description
PROSITE profilePS5088817.072314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-16320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00875449502No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDELNVSSSF SIPTLLSQGN NQPLPSLQQR LQYILKSQTD SWAYAIFWQT SNDDDGRLFL  60
AWGDGHFHGT KMRKGLFGAN NKGSSQQSER KNVIKGIQAL IGDNLDGSNN NINGDYIGLV  120
EDGNDVTDAE WFYVMSLAQS FSFGDGVPGK AFSSGSFVWL TGAQQLQFYS CERAKEAHIH  180
GINTLVCIPT SCGVLELGSS DLIKENWNLV QQVKSLFSSN HENGPIEKNI SFADIGLVTG  240
SQEDCQKFND HDDNNNNTST KKTKTGETTT VAAATVSVTF QDSDHSDSDC QLVDKPVEKK  300
TPKKRGRKPG VSREAPLNHV EAERQRREKL NHRFYALRSV VPHVTKMDKA SLLSDAVAYI  360
NALRAKVDEL ELQVTSKSES KHKKLKIESM DSTTVDNMST TTSVDQIKPN NCSSASFGQN  420
NLSLEVEVRI LGPDAMIRVQ SENVNYPSAR LMRALQELEL HVHHASISSV NDIMLQDIVV  480
KVPQELKTDD GLRSALLRCL EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-40262208195Transcription factor MYC3
4rqw_B3e-40262208195Transcription factor MYC3
4rs9_A3e-40262208195Transcription factor MYC3
4yz6_A3e-40262208195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508165.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S4D3Z60.0A0A1S4D3Z6_TOBAC; transcription factor MYC3-like
STRINGXP_009604694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-80bHLH family protein