PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00506g11024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 857aa    MW: 96725.1 Da    PI: 6.3569
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00506g11024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.92.2e-1565140190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +f+++YA++vGFs+++ + ++ k +g i++ +f Cs e +++++ ++              C  +l++++++++ w+vtk++++H
  Peinf101Scf00506g11024.1  65 NFFDAYARRVGFSTQVGQFSRAKPDGPIISWDFSCSSEDSKRKNVES--------------CSSMLRIERQDSDSWVVTKFVEDH 135
                               69**********************************99888887766..............************************ PP

                      FAR1  86 nHela 90 
                               nH+++
  Peinf101Scf00506g11024.1 136 NHSIV 140
                               **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1265140IPR004330FAR1 DNA binding domain
PfamPF105511.2E-29275367IPR018289MULE transposase domain
PfamPF044342.2E-10552586IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.09552588IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MNIEVIDVER QKRLKSGQRN AEPDQASNDS LPDSFTERDA IIEVDDGEEK PFVGMEFQTQ  60
EAAKNFFDAY ARRVGFSTQV GQFSRAKPDG PIISWDFSCS SEDSKRKNVE SCSSMLRIER  120
QDSDSWVVTK FVEDHNHSIV NAGKVHHLRP RRHFAGASKT VLEAPGTPTD VIVSVDGTRV  180
FANSNEGAKN ASHVELNRVT RNFIPVTPIQ FIQPFIRKRT LGKDAHNLLD YFKRMQAENP  240
GFYYAIQLDD GNCMTNVFWA DARSRIAYSH FGDAVTFDTM YRPNQFQVPF APFTGVNHHG  300
QTVLFGCALL LDESESSFTW LFRTWLSAMN NRAPVSVTTD QDRAIKAAVN QVLPGTRHCI  360
CKWHILREGQ ERLAHVYMAH PSFYGDLYSC INYSETIEDF ESSWASLLDR YDLGKNEWLQ  420
AVYNARDQWA PVYFRDTFFA ALPSSQGVTS FFDGYVNQQT TLPVFFKHYE RAFESSLERE  480
IESDFDTNCT TPVLKTASPM EQQAANLYTK KVFAKFQEEL VETFAYTANK IDGDETLSKF  540
RVAKYEQDDK AYIVMLNLAE MKASCSCQMF EYVGILCRHI LTVFTVTNVL TVPSHYILKR  600
WTKNAKVRQG SDEEAIVKQG NNSLTSRFNH ICLEALRYAE EGAVSVETYD AAISALRDGL  660
RKISIVAKDV ARPPSSQGSG SIQDESIKRT LATSDTAPSL WPWQDAMPRH FNLNDAGLPA  720
GDLYQPTMTP VAINRDGGLA DNVVVCTCFK SMAWVIENKS LASKVAVINL KLQDYGKSPA  780
GETEVHFRLT RVTLEPMLKS MAYINQELSL PANRVAVVNL KLQDAKTPSG ETEVKFQVSR  840
ETLGSMLRSI AYIREQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616992.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616993.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616995.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616996.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616997.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616998.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009616999.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_018630840.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238552.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238553.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238554.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238555.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_019238556.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S4BG320.0A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_009616992.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]