PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00482g02016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 257aa    MW: 29587 Da    PI: 4.8527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00482g02016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-5461331128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyW
  Peinf101Scf00482g02016.1   6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-NIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYW 89 
                               79****************************.99**************84335556888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++v+s +++ +g+kktLv+y+grap+g +tdWvmheyr+
  Peinf101Scf00482g02016.1  90 KSTGKDRRVTS-QNRSIGMKKTLVYYRGRAPQGMRTDWVMHEYRI 133
                               ***********.8899***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-634157IPR003441NAC domain
PROSITE profilePS5100559.6216156IPR003441NAC domain
PfamPF023656.0E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELNIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTS QNRSIGMKKT LVYYRGRAPQ  120
GMRTDWVMHE YRIDDNVCEG TSGIQDTYAL CRVFKKNGVC SEIEEQLGQS SSSVPFVEYP  180
RQGTINFNEY ETPSPDVPLA NNSSSCMELE DEEDKDDSWM QFITEDAWCS TGSNSFHIGE  240
EISPLTPIAN SSYVSHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-54415713169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225973.11e-146PREDICTED: NAC domain-containing protein 86 isoform X2
SwissprotA4VCM03e-86NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A1S4DAP21e-144A0A1S4DAP2_TOBAC; NAC domain-containing protein 86-like isoform X2
TrEMBLA0A1U7XVJ61e-144A0A1U7XVJ6_NICSY; NAC domain-containing protein 74 isoform X2
STRINGXP_009790484.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46212442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-127NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]