PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00471g15006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 91aa    MW: 10435.7 Da    PI: 4.8957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00471g15006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.2e-09650344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT++  +++ +a + + ++   +W+ +a+ +g g+t++++k ++
  Peinf101Scf00471g15006.1  6 SWTPQQNKRFENALAIFDKDtpdRWTNVAKAVGGGKTEEDVKMHY 50
                              7*****************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939258IPR017884SANT domain
SMARTSM007173.6E-6356IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-12562IPR009057Homeodomain-like
PfamPF002491.4E-6650IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASNSSWTPQ QNKRFENALA IFDKDTPDRW TNVAKAVGGG KTEEDVKMHY EILVEDIRRI  60
ESGEAEISQP PVEARNGKSK KMEYIYIYVE V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-22264667RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586717.12e-36PREDICTED: protein RADIALIS-like 5
RefseqXP_016484419.12e-36PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1734e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4B6C64e-35A0A1S4B6C6_TOBAC; protein RADIALIS-like 5
STRINGXP_009586717.17e-36(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-26RAD-like 6