PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00457g29005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 424aa    MW: 47380.6 Da    PI: 7.8357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00457g29005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17106155155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d       k+++lg f+ta  Aa+a+++a+ k++g
  Peinf101Scf00457g29005.1 106 SQYRGVTFYRRTGRWESHIWDG-----GKQVYLGGFDTAHAAARAYDRAAIKFRG 155
                               78*******************3.....5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-16106164IPR016177DNA-binding domain
PfamPF008473.8E-10106155IPR001471AP2/ERF domain
CDDcd000181.81E-11107162No hitNo description
Gene3DG3DSA:3.30.730.109.6E-17107163IPR001471AP2/ERF domain
SMARTSM003808.8E-30107169IPR001471AP2/ERF domain
PROSITE profilePS5103217.833107163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-5198243IPR016177DNA-binding domain
CDDcd000182.16E-12198243No hitNo description
SMARTSM003803.5E-11199247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MFDLNLSCDD VPEESEQLNE LSVAQMENSR TSSTTGDDDN SCSDHMSNCY TFDILKTNRK  60
ESENLGSFVT KELLPWSLND QRIVLAQQQR LQVIKKSRRG PRSRSSQYRG VTFYRRTGRW  120
ESHIWDGGKQ VYLGGFDTAH AAARAYDRAA IKFRGLDADI NFYVSDYEED LKQIKNFSKE  180
EFLHILRRQS TGFSRGSSKF RGVTLHKCGR WEARMGQLLG KKAYDKAAIK SNGREAVTNF  240
ELSTYEGVLS CETADIGGTS HNLDLRLGIS PSSCADNQHG NTSQMGISQC RHGSNGLPEH  300
SEVLSSASTT PRSMLLHGQH MLDQHPLHWN GPNDNLFPTF KGTAIEKGLE VDTSSKWMRQ  360
DQNSYGGSPT APFFSTAASS GFVNSAFAAP SAVVHQLHFP SGALRYQYSP SLTNMNLSQY  420
YCRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339057.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK034e-83RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2H4FXU90.0A0A2H4FXU9_PETHY; BOB
STRINGPGSC0003DMT4000287060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.16e-85related to AP2.7