PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00364g09003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 262aa    MW: 29709.1 Da    PI: 9.7009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00364g09003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1878127255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Peinf101Scf00364g09003.1  78 TYRGVRKRS-WGKWVCEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKG 127
                               69****888.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.1E-3578141IPR001471AP2/ERF domain
PROSITE profilePS5103223.28878135IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2278136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-3278136IPR001471AP2/ERF domain
PfamPF008472.2E-1378127IPR001471AP2/ERF domain
PRINTSPR003671.1E-107990IPR001471AP2/ERF domain
CDDcd000182.18E-3179137No hitNo description
PRINTSPR003671.1E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKDQEQINSN GLNSLPNTTL SPSPSSSSSS SSSSFLSSNI QTRKNYKSKK SSTKIQELTQ  60
NKENKKKKRN EGDEKHPTYR GVRKRSWGKW VCEIREPRKK SRIWLGTYST AEMAARAHDV  120
AALAIKGDSA YLNFPHLAHQ FPRPTSTSPK DIQTAAAKAA VITFPNEYGD DEEVRAEPNR  180
VELQSSHSSN NLFLENAQES LNSLSTEYDD TFFDLPDLSF DMVDQNWRTM SRWQQLVAAR  240
ELQFHFVVLL LSHFRSSGTV MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19751361173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231547.12e-99PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A314KHA74e-98A0A314KHA7_NICAT; Ethylene-responsive transcription factor erf034
STRINGXP_009613128.14e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]