PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00258g18002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 287aa    MW: 32039.2 Da    PI: 9.6048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00258g18002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.7e-21166216256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Peinf101Scf00258g18002.1 166 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 216
                               59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-34165225No hitNo description
PROSITE profilePS5103223.235166223IPR001471AP2/ERF domain
SMARTSM003805.8E-38166229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32166224IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-23166224IPR016177DNA-binding domain
PfamPF008471.3E-14167216IPR001471AP2/ERF domain
PRINTSPR003672.4E-11167178IPR001471AP2/ERF domain
PRINTSPR003672.4E-11189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAAAIDMYNN SSNISDPFQE ELMKALEPFM KGASCSSSPS LSPSTYSSPS TSSSFYPFGE  60
PNLYTDFNSS PTSCFNYMGA AAESGSLGLN HLTPSQILQL QAQIQFQNQQ QQLLQLQQSQ  120
LNFNLFNTSG SIYPRNNSKS SMNCLGVRPV PMKQTGGTSL QKATKLYRGV RQRHWGKWVA  180
EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGEFARL NFPHLRHQLN NELSDFKPLH  240
SSVDAKLQAI CQNLANPKLE ELCSNAKSKT RKSKVEALAA SSFMFMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22165223160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-113HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-113HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073714.11e-113ethylene-responsive transcription factor ERF060-like
SwissprotO656652e-62ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A1J6I9J31e-110A0A1J6I9J3_NICAT; Ethylene-responsive transcription factor rap2-4
STRINGXP_009616719.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-45ERF family protein