PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00181g02003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 139aa    MW: 15815.4 Da    PI: 10.2939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00181g02003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a + + ++   +W+ Iar++g g+++++++ ++ 
  Peinf101Scf00181g02003.1  3 SWTARQNKKFEEALAIYDKDtpgRWHNIARCVG-GKSAEEVRRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.2E-8152IPR001005SANT/Myb domain
PROSITE profilePS5129312.587154IPR017884SANT domain
CDDcd001677.38E-9350No hitNo description
SuperFamilySSF466896.86E-13357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-4356IPR009057Homeodomain-like
PfamPF002492.6E-7347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MASWTARQNK KFEEALAIYD KDTPGRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
IPLPNYKAVE SNSRGYANEQ SNLKSLMKKI ISAALTLERK YIMLSVLPRQ SKMIQTSAAK  120
KLPTYSPLAE PKLILQHST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-284841191RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4578116e-58CU457811.8 S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence.
GenBankCU4682396e-58CU468239.4 S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence.
GenBankHG9755166e-58HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.11e-52PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1736e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J2A23e-51A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.12e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-38RAD-like 6