PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00181g01018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 188aa    MW: 21836.3 Da    PI: 7.1437
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00181g01018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a + + ++   +W+ Iar++g g+++++++ ++ 
  Peinf101Scf00181g01018.1  3 SWTARQIKKFEEALAIYDKDtpdRWHNIARCVG-GKSAEEVRRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.4E-8152IPR001005SANT/Myb domain
PROSITE profilePS5129313.293154IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.1E-4356IPR009057Homeodomain-like
SuperFamilySSF466896.49E-12356IPR009057Homeodomain-like
CDDcd001671.32E-8350No hitNo description
PfamPF002492.7E-7347IPR001005SANT/Myb domain
SMARTSM007170.5272126IPR001005SANT/Myb domain
PROSITE profilePS512935.21375128IPR017884SANT domain
SuperFamilySSF466892.8E-980131IPR009057Homeodomain-like
CDDcd001674.98E-484124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASWTARQIK KFEEALAIYD KDTPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIKNGQ  60
IPLPNYRSTE SNSTGYANQQ RQNKKFEEAL AIYDKDTPDR WHNIARNVGG KSAEEVWRHY  120
ELLVKDIMQI ENGQVPLPNY RNAGSNNTDY ANEQRYHKSL FSTQVSEEPE DSVRTNLQLC  180
SITPQVLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-274146479RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.13e-46PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1735e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5UUT95e-50A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGXP_009771192.13e-45(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-33RAD-like 6