PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00179g11017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 85aa    MW: 9785.97 Da    PI: 9.0597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00179g11017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-11346344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WTt   +++ da +++ ++   +W+ Iar++g g+++++++ ++
  Peinf101Scf00179g11017.1  3 SWTTKQNKRFEDALALFDKDtpdRWHNIARCVG-GKSAEEVRKHY 46
                              6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-6152IPR001005SANT/Myb domain
PROSITE profilePS512939.969154IPR017884SANT domain
SuperFamilySSF466898.16E-13358IPR009057Homeodomain-like
PfamPF002491.2E-7346IPR001005SANT/Myb domain
CDDcd001674.80E-7350No hitNo description
Gene3DG3DSA:1.10.10.603.6E-4451IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASWTTKQNK RFEDALALFD KDTPDRWHNI ARCVGGKSAE EVRKHYDLLL KDIMQIENGQ  60
VPLPKYNKAA ESNGRGYANE QRTYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-254661173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771192.14e-48PREDICTED: protein RADIALIS-like 3
RefseqXP_016490582.14e-48PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4BNX81e-46A0A1S4BNX8_TOBAC; protein RADIALIS-like 3
TrEMBLA0A1U7VTH51e-46A0A1U7VTH5_NICSY; protein RADIALIS-like 3
STRINGXP_009771192.12e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-34RAD-like 6