PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00094g12004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 89aa    MW: 9786.82 Da    PI: 10.2223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00094g12004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.8e-108471354
                       AP2 13 grWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54
                              g ++AeIrdp   + k++r +l+++ t e+A  a+++a+ k++
  Peinf101Scf00094g12004.1  8 GTFAAEIRDP---NrKSARLWLETYETLEDATFAYDQAAFKIR 47
                              7899*****9...6678***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.145156IPR001471AP2/ERF domain
SMARTSM003801.4E-10562IPR001471AP2/ERF domain
PIRSFPIRSF0381233.4E-13589IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.104.7E-19757IPR001471AP2/ERF domain
PfamPF008471.8E-5747IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-13758IPR016177DNA-binding domain
CDDcd000187.67E-14858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MEAAVTMGTF AAEIRDPNRK SARLWLETYE TLEDATFAYD QAAFKIRSSK ARLNFSHSVG  60
SDMAKSARVT SRRRSSSLEP STSSSSTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-178611568ATERF1
3gcc_A3e-178611568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787891.11e-31PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_016497257.11e-31PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_019262796.11e-31PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K17e-25ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A1J6J5353e-30A0A1J6J535_NICAT; Ethylene-responsive transcription factor 13
TrEMBLA0A1S4C7M53e-30A0A1S4C7M5_TOBAC; ethylene-responsive transcription factor 13-like
TrEMBLA0A1U7XE103e-30A0A1U7XE10_NICSY; ethylene-responsive transcription factor 13-like
STRINGXP_009787891.14e-31(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-22ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]