PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00094g02005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 271aa    MW: 30146 Da    PI: 6.7948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00094g02005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1893143256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr +  +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g+
  Peinf101Scf00094g02005.1  93 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 143
                               69****887.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.57893150IPR001471AP2/ERF domain
PfamPF008473.0E-1393143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3293151IPR001471AP2/ERF domain
SMARTSM003807.2E-3693156IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2293151IPR016177DNA-binding domain
PRINTSPR003671.4E-1094105IPR001471AP2/ERF domain
CDDcd000183.28E-3294152No hitNo description
PRINTSPR003671.4E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEDHHLHHEF AISSSSTTCS SFASSSNCLS SPSTTTSSSS SSSFHESNAK TPSKDYNCKS  60
KKSSKKVQEF SNNGNEENKK RRKSEGGDEK HPTYRGVRKR NWGKWVSEIR QPRKKSRIWL  120
GTYPTAEMAA RAHDVAALAI KGHSAYLNFP HLADQLPRPA SSSPKDIQVA AAKAATATVL  180
EENFSGGEVE SSQIELHSSH SSTNLVSENI QESLNSPSLD HDDTFFDLPD LSIDRVDQND  240
RYQYPTSTWQ ALVGADNGIF RLEEPFLWEC Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18911511273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771308.11e-131PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-61ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U7VY641e-129A0A1U7VY64_NICSY; ethylene-responsive transcription factor ERF039-like
STRINGXP_009771308.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]