PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00082g09001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ZF-HD
Protein Properties Length: 162aa    MW: 18434.6 Da    PI: 8.828
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00082g09001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.72.4e-27960559
               ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                               YkeCl+NhAa+lG +a DGCgEf+ +   ++ + +l+CaACgCHRnFHR+ +++
  Peinf101Scf00082g09001.1  9 LYKECLRNHAANLGNYANDGCGEFTLD---DTLPGTLQCAACGCHRNFHRKVTNY 60
                              7*************************8...66799****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.1E-23958IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-151056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.691057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-221056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-1478146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2579148IPR009057Homeodomain-like
TIGRFAMsTIGR015658.7E-2588146IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGDNTNDLY KECLRNHAAN LGNYANDGCG EFTLDDTLPG TLQCAACGCH RNFHRKVTNY  60
NRDPEMTTDT IDGSTGRLSL ESQERSGKKR FRTKFKTDQK EKMLEFAEKL GWKLQRTDQE  120
DEIKIFCKRA GVSRKVFKVW MHNHKNSSST SVSTGNASSL TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-19891511879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000742.18e-78PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ9SB615e-39ZHD2_ARATH; Zinc-finger homeodomain protein 2
SwissprotQ10DV59e-39ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
SwissprotA2XLF49e-39ZHD11_ORYSI; Zinc-finger homeodomain protein 11
TrEMBLB9I4V44e-77B9I4V4_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0012s03770.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-38homeobox protein 22