PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00073g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 87aa    MW: 9674.8 Da    PI: 6.2348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00073g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.6e-123174344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT+ E +++ +a + + ++   +W  Ia+++g g++++++k+++
  Peinf101Scf00073g00010.1 31 AWTPNENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSAEEVKHHY 74
                              7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9242782IPR017884SANT domain
SMARTSM007173.8E-92880IPR001005SANT/Myb domain
CDDcd001671.75E-83174No hitNo description
SuperFamilySSF466899.72E-143184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-73185IPR009057Homeodomain-like
PfamPF002491.4E-103174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MTTSMSFETY SPAPSSSCSS ACAMASNSLP AWTPNENKKF EQALAVYDKD TPDRWQNIAK  60
YVGGKSAEEV KHHYEILIED LKHKGFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-2232831162RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562162.14e-35PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1732e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8FSL31e-33A0A1U8FSL3_CAPAN; Transcription factor RADIALIS
TrEMBLA0A2G2XGW11e-33A0A2G2XGW1_CAPBA; Transcription factor RADIALIS
TrEMBLA0A2G3AAH41e-33A0A2G3AAH4_CAPAN; protein RADIALIS-like 1
TrEMBLA0A2G3D7X71e-33A0A2G3D7X7_CAPCH; Transcription factor RADIALIS
TrEMBLA0A3Q7F9L21e-31A0A3Q7F9L2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000092772e-32(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-25RAD-like 6