PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00073g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 120aa    MW: 13770.7 Da    PI: 7.8787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00073g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-105093344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +W++ E +++ +a + + ++   +W  Ia+++g g++ +++k ++
  Peinf101Scf00073g00009.1 50 AWSPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSIEEVKQHY 93
                              7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2946101IPR017884SANT domain
SMARTSM007173.1E-84799IPR001005SANT/Myb domain
SuperFamilySSF466897.25E-1350104IPR009057Homeodomain-like
PfamPF002494.1E-95093IPR001005SANT/Myb domain
CDDcd001676.84E-95093No hitNo description
Gene3DG3DSA:1.10.10.601.2E-55094IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MTTGMSFEND RFPLLHHIVL LVVSKEDGSS LILLFHLFQN QTMASNSLSA WSPKENKKFE  60
QALAVYDKDT PDRWQNIAKY VGGKSIEEVK QHYAILIEDL KHIESGDVPF PKYRSGGKYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-3143117177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603278.12e-47PREDICTED: protein RADIALIS-like 1
RefseqXP_016451407.12e-47PREDICTED: protein RADIALIS-like 1
RefseqXP_016451408.12e-47PREDICTED: protein RADIALIS-like 1
RefseqXP_018627017.12e-47PREDICTED: protein RADIALIS-like 1
RefseqXP_019242704.12e-47PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS33e-31RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A1J6J4174e-46A0A1J6J417_NICAT; Protein radialis-like 1
TrEMBLA0A1S3YH964e-46A0A1S3YH96_TOBAC; protein RADIALIS-like 1
STRINGXP_009603278.16e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-33RAD-like 6
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]