PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00057g09001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 576aa    MW: 62875 Da    PI: 5.824
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00057g09001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22121223199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+ltpsd+++ g +++p+ +a+++         ++ +   lt++d +g  We+++iyr++++r++lt+GW++Fv+++++ +gD
  Peinf101Scf00057g09001.1 121 FVKILTPSDANNGGGFSVPRFCADSIfprlnfaADPPVQ--NLTIRDIHGALWEFRHIYRGTPRRHLLTTGWSKFVNSKKIVAGD 203
                               89*********************999*****97666666..699***************************************** PP

                               EEEEEE-SS.SEE..EEEEE-S CS
                        B3  79 fvvFkldgr.sefelvvkvfrk 99 
                               + vF   ++ +++el+v+v+r+
  Peinf101Scf00057g09001.1 204 SAVFI--RKlKTGELYVGVRRA 223
                               *****..56699********97 PP

2Auxin_resp80.73.4e-27259342183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+ + +Fev+ +Pra++++Fvv++e ve++ +v ++vG R+kma+etedss++ + +Gtv++++  ++  W++S+Wr+L+
  Peinf101Scf00057g09001.1 259 AAEMATRGLAFEVTCYPRAGWADFVVRAEAVEASSTVFWTVGVRVKMAVETEDSSRTACfQGTVSSINLPESGPWRGSPWRMLQ 342
                               67889999**************************************************99**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-29111231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-32113232IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-20120222No hitNo description
SMARTSM010194.0E-19121224IPR003340B3 DNA binding domain
PfamPF023625.0E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59121224IPR003340B3 DNA binding domain
PfamPF065078.7E-25259342IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDNNQYMSDS AAMPPSTGED VDPTIWRSIA GNSVQIPSVG SRVYYFPQGH AEHATCASPI  60
LLSAVIPPFI PCRVLSVRYL ADSVTDEAFA KIVLLPSNQN DDDVVTLNAA ADDDENDVVS  120
FVKILTPSDA NNGGGFSVPR FCADSIFPRL NFAADPPVQN LTIRDIHGAL WEFRHIYRGT  180
PRRHLLTTGW SKFVNSKKIV AGDSAVFIRK LKTGELYVGV RRATRGNERW NSPVLKTEQL  240
GSGWRTGQGR VPMEAVVDAA EMATRGLAFE VTCYPRAGWA DFVVRAEAVE ASSTVFWTVG  300
VRVKMAVETE DSSRTACFQG TVSSINLPES GPWRGSPWRM LQITWDEPEV LQNAKRVNPW  360
QVECIVPTPQ VHSAFPPSKK IKLPNGLLPD GEGKHFFPMT GLSNPMIGLC SPLLGNYTSF  420
PAGMQGARQN QICVSGLSNV KSNNNLGSCT DNSIDEEIKP KLESVSTKLN IGSSYSDNLS  480
LDSHSSVHFD NELVIKPGSS SFTKVRVSSF QLFGKLIHVE TVEGGFDAFG CSDSDSIGVF  540
KEIDGALKSN ISLNKPYIEL FDSLDVQHRS CEACSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-692536323353Auxin response factor 1
4ldw_A2e-692536323353Auxin response factor 1
4ldw_B2e-692536323353Auxin response factor 1
4ldx_A2e-692536323353Auxin response factor 1
4ldx_B2e-692536323353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791106.10.0PREDICTED: auxin response factor 17
RefseqXP_016439970.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU61e-167ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1S3XJ260.0A0A1S3XJ26_TOBAC; Auxin response factor
TrEMBLA0A1U7XNB20.0A0A1U7XNB2_NICSY; Auxin response factor
STRINGXP_009791106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-167auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]