PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g01024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family SBP
Protein Properties Length: 359aa    MW: 38751.9 Da    PI: 9.2463
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g01024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP101.56.8e-3275143176
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                               +CqvegC++dls+ak y++rhkvC++hsk+p+v+v+gleqr       fh+l efD++krsCrrrLa hnerrrk+
  Peinf101Scf00049g01024.1  75 RCQVEGCQVDLSNAKAYYSRHKVCSMHSKSPTVVVAGLEQR-------FHQLPEFDQGKRSCRRRLACHNERRRKP 143
                               6**************************************97.......7*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-2669130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.71873143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3174146IPR004333Transcription factor, SBP-box
PfamPF031108.1E-2276142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MELSSVSSNS NSSSSDSLNG LKFGKKIYFG NVGIGVEAKK ESVSLPVTGT DHLPPAPVMS  60
KRGRSGMVQG GQPPRCQVEG CQVDLSNAKA YYSRHKVCSM HSKSPTVVVA GLEQRFHQLP  120
EFDQGKRSCR RRLACHNERR RKPPSGSLFS AHYGSLSSST FENNSSRSGS ILLDFSSPPK  180
LNESSWPNTR ESEQGWDHQS TASGKFLQRP WLNSSESVTN DIVLQGSATR TSYPCPGVPS  240
GDCFPGASGS SGALSLLSNR SWESRNRPSS LANIHGVHTI QPSSSHGAPT NHFSRPSLVF  300
KGNEASSSSH EMPPDLGLGQ MTHAANNQYS SELGMAQHME LDHSKGGYHA SVQNVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-21761421184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362236.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2K9ZY740.0A0A2K9ZY74_PETHY; Squamosa promoter binding-like protein 9b
STRINGPGSC0003DMT4000297510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.14e-36squamosa promoter binding protein-like 15