PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00037g11002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 265aa    MW: 29348.5 Da    PI: 5.861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00037g11002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1767116255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Peinf101Scf00037g11002.1  67 SYVGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAMSIKG 116
                               79****998.**********843...6**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1266116IPR001471AP2/ERF domain
CDDcd000181.70E-2966126No hitNo description
SMARTSM003808.7E-3567130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3067125IPR001471AP2/ERF domain
PROSITE profilePS5103221.90467124IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2067125IPR016177DNA-binding domain
PRINTSPR003671.1E-86879IPR001471AP2/ERF domain
PRINTSPR003671.1E-890106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAEPPNIETE SSSNSNSSSS VLNYTLPNNV SSKLHQSKRC REDDATSSGT ARNNKNSKNN  60
SDGKHPSYVG VRMRAWGKWV SEIREPRKKS RIWLGTFATP EMAARAHDVA AMSIKGNSAI  120
LNFPELAELL PRPATCSARD VQTAAVKAAH MDHLNPNTKL EVVETSTTLV SLTSSTSSSS  180
LISSVTSSKA PPHQEELTEI VELPKLDTCY ESVESAQEEF RFLESDGWDY FRQPWLQSLE  240
YFGGDNYMGL EGVHSCSFES TLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18651241272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620060.14e-87PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD34e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J6JYG61e-84A0A1J6JYG6_NICAT; Dehydration-responsive element-binding protein 3
STRINGXP_009620060.11e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]