PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13694859g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 341aa    MW: 38603.8 Da    PI: 7.7891
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13694859g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.29.9e-411192653131
                          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec. 73 
                                   kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+kel +           s+ss sec 
  Peinf101Ctg13694859g00003.1 119 SKKDRHSKITTAQGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLNKSKSAVKELEEGtstaniggaiSASSTSECe 200
                                  79**********************************************************9996777777766555557776 PP

                          TCP  74 .......eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                         e++++         +       +++++++ ++++ + a ++  +akesr++ararar rt +k  
  Peinf101Ctg13694859g00003.1 201 visgiidESATNDI-------QkeqpiinSKKEKKKAKSSRIRAAINHPVVAKESRKEARARARARTLKKSL 265
                                  66554322222222.......13334553333333344444444445888899*************998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-43119263IPR005333Transcription factor, TCP
PROSITE profilePS5136934.899120178IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.856246263IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MYPSNNYSPI SSSSNLYHMP SPSSIQYEHE LFQYFHDHHL LQPQQLQFLT TTADHHQNLD  60
DTNMAEEYSN KDTVISSTTT NNNNNLEEDE KGCKNKKVHD MSSSTITSTI NKNKINKSSK  120
KDRHSKITTA QGPRDRRMRL SLDVARKFFN LQDLLGFDKA SKTVEWLLNK SKSAVKELEE  180
GTSTANIGGA ISASSTSECE VISGIIDESA TNDIQKEQPI INSKKEKKKA KSSRIRAAIN  240
HPVVAKESRK EARARARART LKKSLNIGDE SKLCNEADTL RSWKPYEESG SQGYTNKENV  300
VDDPDLVVTT GNWSPFTIIN FHHNTEISHE HQFTNFQLWE A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001060.0JQ400106.1 Petunia x hybrida putative transcription factor (TCP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506815.11e-112PREDICTED: transcription factor DICHOTOMA-like
TrEMBLG0ZGI80.0G0ZGI8_PETHY; Putative transcription factor (Fragment)
STRINGPGSC0003DMT4000145726e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-29TCP domain protein 12